SUMMER SCHOOL OF SINGLE CELL

FROM THE LAB TO DATA ANALYSIS

September 7 – 14, 2022, Pilsen, Czech Republic

Charles University, University of West Bohemia,

Medical University of Vienna, London South Bank University, University of Milan, University of Warsaw, Heidelberg University and University of Copenhagen

Organizers and supervisors

Monika Holubová

Monika Holubová

Group leader of the Laboratory of Tumor Biology and Immunotherapy, Biomedical Center, Faculty of Medicine in Pilsen, Charles University

Dr. Holubová main interest is study of immune and cancer cells interactions. She is responsible for the translation research and development of the new immunotherapeutic approaches for the hematological disorders and immune dysregulation. She is an expert in cell production, flow cytometry and cell sorting including single-cell isolation.

Lucie Houdová

Lucie Houdová

Group leader of the Clinical decision support lab of European Centre of Excellence NTIS, Faculty of Applied Sciences, University of West Bohemia

Dr. Houdová main interest is research of IT tools for applications of personalized and precise medicine, primarily focused on the area of hematology and oncology. She is experienced in data analysis, methods and information systems design, computer modeling for decision support in medicine and technical practice. Currently, she is vice-chairman of the ELIXIR CZ Board (European Life-Science Infrastructure for Biological Information – Czech node).

School patron

Milena Králíčková

Milena Králíčková

Rector of Charles University

Prof. Králíčková is a rector of Charles University. She was a key scientific leader during the development of a Biomedical center of Faculty of Medicine, was deeply involved in the establishment of 4EU+ alliance and strongly supports the activities within Elixir CZ. Her huge encouragement was the basis for the beginning of the collaboration between organizers and supervisors leading to the organization of this unique summer school.

Main wet lab supervisor

Valentina Caputo

Valentina Caputo

Senior Lecturer of Biomedical Science, School of Applied Sciences, London South Bank University

Dr. Caputo is focused on the study of epigenetic mechanisms in human disease and the development of epigenetic therapeutic approaches. Her particular interest is in investigating the molecular mechanisms by which nuclear architecture, transcriptional regulation and epigenetics can be causative of a disease phenotype and how this can be targeted for therapy of human disorders.

Main data analysis supervisor

Iros Barozzi

Iros Barozzi

Junior Group Leader at Medical University of Vienna & Honorary Research Fellow at Imperial College London

Dr. Barozzi is a computational biologist interested in regulatory genomics. He combines integrative analytical approaches with machine learning to investigate the role of the non-coding genome in embryonic development and in the onset and progression of hormone-dependent tumours. He is currently using single-cell transcriptomics and epigenetic profiling to study the role of transcriptional heterogeneity in drug-resistant luminal breast cancers. He si also ELIXIR-UK member.

Local supervisor

Pavel Ostašov

Pavel Ostašov

Senior researcher in Biomedical Center, Faculty of Medicine in Pilsen, Charles University

Dr. Ostašov main interest is analysis of single cells in cancer and their heterogeneity and liquid biopsies. He is experienced in library preparation, next generation sequencing and data analysis. He is also member of ELIXIR CZ.

E-learning supervisor

Miroslava Čedíková

Miroslava Čedíková

Assistant Professor in Biomedical Center and Department of Physiology, Faculty of Medicine in Pilsen, Charles University and Faculty of Health Care Studies, University of West Bohemia

Dr. Čedíková works mostly with pre-graduate students and is a specialist in preparation of the teaching materials. In research, she is interested in immune cells and their role in the pathophysiology of endometriosis. She works with advanced microscopy including life cell imaging.

Other supervisors

Diana Macečková

Lenka Vaňková

Robin Klieber

Aleksander Jankowski