SUMMER SCHOOL OF SINGLE CELL

FROM THE LAB TO DATA ANALYSIS

September 4 – 11, 2024, Pilsen, Czech Republic

Charles University, University of West Bohemia,

University of Warsaw, London South Bank University, University of Pennsylvania, University of Milan, University of Geneva, Masaryk University and Heidelberg University

PROGRAM

Day 1 (Wed, Sept. 4) – Welcome and Lectures

7:00 – 8:00 Registration
Welcome and opening
Milena Králíčková (Rector of Charles University)
Scientific lectures (schedule and lecture title will be specified during spring)
Ana Stojanovic (University of Heidelberg)
Domenico Mavilio (University of Milan)
Denis Migliorini (University of Geneva)
Agnieszka Ciesielska (10X Genomics)
Diletta Dolfini (University of Milan)
Antonia Rotolo (University of Pennsylvania)
Vadir Lopez-Salmeron (BD Bioscience)
Lenka Bešše (Masaryk University and Kantonsspital St.Gallen)
Bartosz Wojtaś (Nencki Institute of Experimental Biology, Polish Academy of Sciences)
Michal Kolář (Institute of Molecular Genetics, Czech Academy of Sciences)

Day 2 (Thu, Sept. 5) – Basic training for wet lab and data analysis

Morning session
Basic training for wet lab and data analysis
R programing basic training
Afternoon session
Introduction to data analysis

Day 3 (Fri, Sept. 6) – Wet lab day 1

Group A Single-cell sample preparation and 10XGenomics training (supervisors: Valentina Caputo, Pavel Ostašov, Diana Macečková, Robin Klieber)
Group B Cell sorting and single-cell analysis using Rhapsody system (supervisors: Antonia Rotolo, Monika Holubová, Jiří Šinkora)

Day 4 (Sat, Sept. 7) – Wet lab day 2

Group A Cell sorting and single-cell analysis using Rhapsody system (supervisors: Antonia Rotolo, Monika Holubová, Jiří Šinkora)
Group B Single-cell sample preparation and 10XGenomics training (supervisors: Valentina Caputo, Pavel Ostašov, Diana Macečková, Robin Klieber)

Day 5 (Sun, Sept. 8) – Day-off

Organized tour through Pilsen with visit to the brewery and beer tasting.

Day 6-8 (Mon, Sept. 9-11) – Data analysis (and barbecue party)

Supervision: Aleksander Jankowski, Bartosz Wojtaś, Kateřina Wolf – program will be specified during spring

Note: Unless specified directly in the program Lunch and coffee breaks will be determined according to the current situation.